PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_12832.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 25523.5 Da PI: 5.235 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 16 | 63 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ k +Ka+ L ++ e++k+L MLOC_12832.3 16 RSHSEAERRRRQRINGHLARLRSLLPNT----TKQTDKASLLAEVLEHVKEL 63 78*************************8....355***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.897 | 13 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.90E-11 | 16 | 66 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 16 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 16 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-11 | 16 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-12 | 19 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.39E-5 | 116 | 163 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.0E-6 | 116 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MNAGEIMDAK ALAASRSHSE AERRRRQRIN GHLARLRSLL PNTTKQTDKA SLLAEVLEHV 60 KELKRQTSAM TMMAAAAVGG DEDDDGGPVQ MLPTEADELG VDAAEDGDGR LVVRASLCCE 120 DRPDLIPDII RALAALRLRA HRAEITTLGG RVRSVLLITA EEGEEADDEG GRVSGDGIDE 180 ECAASHRRHE CIASVQEALR GVMDRRAACS NDTSSSGGGG GGSIKRQRMN YGAHEQCSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_12832.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368022 | 0.0 | AK368022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066I05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188174.1 | 1e-120 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 4e-59 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | M0UPG0 | 1e-134 | M0UPG0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_12832.3 | 1e-169 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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