PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12832.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 238aa    MW: 25395.3 Da    PI: 5.235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12832.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.3e-141662354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ e++k+L
  MLOC_12832.1 16 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLEHVKEL 62
                  78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5261362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-111665No hitNo description
SuperFamilySSF474594.58E-151672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-141671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-111662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-131968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.0E-6115165No hitNo description
SuperFamilySSF550213.39E-5115162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MNAGEIMDAK ALAASRSHSE AERRRRQRIN GHLARLRSLL PNTTKTDKAS LLAEVLEHVK  60
ELKRQTSAMT MMAAAAVGGD EDDDGGPVQM LPTEADELGV DAAEDGDGRL VVRASLCCED  120
RPDLIPDIIR ALAALRLRAH RAEITTLGGR VRSVLLITAE EGEEADDEGG RVSGDGIDEE  180
CAASHRRHEC IASVQEALRG VMDRRAACSN DTSSSGGGGG GSIKRQRMNY GAHEQCSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680220.0AK368022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188174.11e-122transcription factor bHLH30-like
SwissprotQ9S7Y17e-61BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A287RL231e-166A0A287RL23_HORVV; Uncharacterized protein
TrEMBLF2DVV41e-166F2DVV4_HORVV; Predicted protein
STRINGMLOC_12832.31e-120(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]