PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

MLOC_12609.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 57aa MW: 6618.1 Da PI: 11.0492

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12609.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.8	3.7e-22	1	37	16	52
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +pik AA eL+v+lT+LK++CR+ GI+RWPhRk+ksl MLOC_12609.2 1 MPIKRAAEELNVGLTILKKRCREIGIPRWPHRKVKSL 37 79*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.311	1	57	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-18	1	37	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
MPIKRAAEEL NVGLTILKKR CREIGIPRWP HRKVKSLETL IKNAQVFLLI CVSFLFV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12609.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822796.1	2e-21	protein RKD1
Swissprot	Q9LVU8	3e-18	RKD4_ARATH; Protein RKD4
TrEMBL	A0A287UQZ0	3e-33	A0A287UQZ0_HORVV; Uncharacterized protein
STRING	MLOC_12609.1	1e-23	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-20	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]