PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12079.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 199aa    MW: 22034.3 Da    PI: 6.872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12079.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30108166159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  MLOC_12079.1 108 LDDGFKWRKYGKKAVKNSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 166
                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-3296168IPR003657WRKY domain
SuperFamilySSF1182909.68E-28100168IPR003657WRKY domain
PROSITE profilePS5081131.582103168IPR003657WRKY domain
SMARTSM007747.6E-35108167IPR003657WRKY domain
PfamPF031064.4E-24109165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAASLGLNPE AVFSSAFAYS SPFVADHCAP PARAVVDDTD YAAQLDLHDD HQHYPFDQFE  60
YSPPTPTAQI SFAGAGDDEH RSEKTIKIST RVSAGRIGFR TRSEVEILDD GFKWRKYGKK  120
AVKNSPNPRN YYRCSAEGCG VKKRVERDRD DPRYVVTTYD GVHNHATPGA AEQYYCYSPP  180
RSVVSSPPTA YSAAGLLQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2893168277Probable WRKY transcription factor 4
2lex_A5e-2893168277Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571960.0AK357196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048A03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169646.11e-119probable WRKY transcription factor 24
TrEMBLF2CZY91e-145F2CZY9_HORVV; Predicted protein
STRINGMLOC_12079.11e-146(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-41WRKY DNA-binding protein 50