PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_12058.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 20688.2 Da PI: 8.3485 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 127 | 172 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s +++L +Ave+I+ Lq MLOC_12058.2 127 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIRGLQ 172 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.31 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-16 | 124 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.26E-13 | 125 | 176 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-15 | 126 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-10 | 127 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-13 | 127 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MKSQLSFTSG GPQTAAHLSR ISEGASLFPG ADVVRAAAHS GGEHPVSRSF SASGSSGGFS 60 IVGPWDESRE IIGTLDLGGY ESQFSGMASS SSLELAGMDK YMQAQQQQDQ VGFKVRAKRG 120 CATHPRSIAE RERRTRISEK LRKLQDLVPN MDKQTSTSDM LDLAVEHIRG LQSQLQVMKH 180 EQDKCTCCSK P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_12058.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249954 | 0.0 | AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165844.1 | 1e-110 | transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 8e-45 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A287U8F1 | 1e-138 | A0A287U8F1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_12058.3 | 1e-123 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 6e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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