PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11665.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 58aa MW: 6726.63 Da PI: 9.7476 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.6 | 1.1e-06 | 10 | 35 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cg++F++ s L+ H r H MLOC_11665.8 10 HMCPypECGRRFTQESKLRAHFRAqH 35 689999***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.81E-7 | 1 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-9 | 9 | 32 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0077 | 10 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.032 | 10 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKFGA QNLGGPVMNP GVYSRVQT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11665.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356960 | 9e-55 | AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149431.1 | 2e-26 | uncharacterized zinc finger protein At4g06634 isoform X1 | ||||
TrEMBL | A0A3B6PLQ5 | 4e-26 | A0A3B6PLQ5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6QGH2 | 4e-26 | A0A3B6QGH2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WCC9 | 4e-26 | A0A446WCC9_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453NX68 | 3e-26 | A0A453NX68_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6AL_BA6465E82.1 | 4e-26 | (Triticum aestivum) | ||||
STRING | Traes_6AL_BA6465E821.1 | 4e-26 | (Triticum aestivum) | ||||
STRING | Traes_6AL_BA6465E822.1 | 4e-26 | (Triticum aestivum) | ||||
STRING | Traes_6BL_CC009B78A.2 | 9e-26 | (Triticum aestivum) | ||||
STRING | Traes_6DL_F47CFC6D9.1 | 7e-26 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-09 | C2H2 family protein |