PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11457.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 358aa    MW: 39767.1 Da    PI: 7.9
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11457.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.8e-144077340
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                  +++C+Ckks+Clk+YC Cfa+g++Cse C C+ C Nk 
  MLOC_11457.1 40 CRTCSCKKSRCLKLYCVCFASGSHCSELCGCDPCYNKP 77
                  789*********************************96 PP
2TCR45.41.7e-14116151439
           TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                   ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  MLOC_11457.1 116 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 151
                   79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-93879IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.44739153IPR005172CRC domain
PfamPF036382.6E-104176IPR005172CRC domain
SMARTSM011141.7E-11115154IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-11116150IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MALVSAPAPA AVWTAVSPPA EANGSSDRRK KRKAEDGEGC RTCSCKKSRC LKLYCVCFAS  60
GSHCSELCGC DPCYNKPIHG VQQNTPPGLP LQVVRTAEAG QNSAEFARYQ MDFFRRKCTC  120
KKSGCLKKYC DCYQGGAGCS INCKCDDCKN PYGKKVGVIL DGKSILAAPT PGPMPIERNG  180
TGVISSDDDD DDEDDYYMNR PLSPIPPSPV SRESSFQQET LVGVEVHTMN GHLYPKPLTQ  240
VRPESWQLSR RPVEEARGEQ WRYMRRPSED GTSEGMEGHA DPKFHQRDNS NKPRESHADN  300
RFSIPRCIEV MNGMADLSPV DKSLAPDVFL DPSNREIFLS LSVDIRTMWL KRKMRSLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754080.0AK375408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3093G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189112.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A287QE250.0A0A287QE25_HORVV; Uncharacterized protein
TrEMBLA0A287QE670.0A0A287QE67_HORVV; Uncharacterized protein
STRINGMLOC_11457.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-39TESMIN/TSO1-like CXC 2