PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 21689.8 Da PI: 10.101 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.3 | 4e-16 | 7 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeek...ew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+ F+Pt elv++yL +++ + +i+e d++++ P++Lp + +++++ w +fF+ + ++ t + + gyW + g +k+ + MLOC_11017.1 7 IAGCVFQPTGRELVNHYLVPRAGLGGDIVPGFIEEGvDVLSLPPRKLPFRENHKREygeVWgFFFAAQPARQ-T--CPP-PGAGGYWVQYGPEKAYY 99 689*****************99888755556777645***********532222223436756665554443.2..222.3458************9 PP NAM 94 sk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 + +ge+v ++ +++ kg + + + t+W+m+eyr+ MLOC_11017.1 100 GQtGGEAVAFRRRFAYRftwKGGEVR-SPTRWLMKEYRI 137 9878899*******998766666555.68********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-19 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.017 | 6 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-12 | 8 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MANPNLIAGC VFQPTGRELV NHYLVPRAGL GGDIVPGFIE EGVDVLSLPP RKLPFRENHK 60 REYGEVWGFF FAAQPARQTC PPPGAGGYWV QYGPEKAYYG QTGGEAVAFR RRFAYRFTWK 120 GGEVRSPTRW LMKEYRINRG SAAFRHAHPD PVAPDVVFVV SKVYRKPVLP PPVDSSSSEE 180 EGSERSIVLK KRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_11017.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372648 | 0.0 | AK372648.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008D18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158486.1 | 1e-104 | NAC transcription factor NAM-B2-like | ||||
TrEMBL | F2E923 | 1e-138 | F2E923_HORVV; Predicted protein | ||||
STRING | MLOC_11017.1 | 1e-139 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |