PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10815.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 22374.3 Da PI: 7.273 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.3 | 1.2e-07 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P++ K +Ka++L +A+eY+k+Lq MLOC_10815.4 3 ALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 31 799999997.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.8E-11 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.131 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.08E-8 | 1 | 35 | No hit | No description |
SuperFamily | SSF47459 | 1.19E-10 | 2 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-5 | 3 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPSYL SGALEPVQAS 60 QMFAALGASG RNVAAPSSGA VAPPVNQSSG AHLSFDPMNS PQQNQPQPLV LASCPKTTIP 120 EPPFHLESSQ SHLQSFQLPE SSQMMLRGDI MLKHHLTSAQ ERADPPGNKM NSLRQESTML 180 NTHFDGCSRS KEQSHDMVPA NTRHV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10815.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374787 | 0.0 | AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169799.1 | 1e-138 | transcription factor PIF3-like | ||||
Refseq | XP_020169800.1 | 1e-138 | transcription factor PIF3-like | ||||
TrEMBL | A0A287VS99 | 1e-148 | A0A287VS99_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287VSP5 | 1e-148 | A0A287VSP5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10815.3 | 1e-148 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 7e-25 | bHLH family protein |