PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10815.10
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 168aa    MW: 18117.6 Da    PI: 6.6759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10815.10genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.7e-083312255
                   HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    L++l+P++      K +Ka++L +A+eY+k+Lq
  MLOC_10815.10  3 ALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                   799999997.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.131130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-9135No hitNo description
SuperFamilySSF474598.24E-11241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPSYL SGALEPVQAS  60
QMFAALGASG RNVAAPSSGA VAPPVNQSSG AHLSFDPMNS PQQNQPQPLV LASCPKTTIP  120
EPPFHLESSQ SHLQSFQLPE SSQMMLRGDI MLKHHLTSAQ ERADPPGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10815.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747870.0AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169799.11e-110transcription factor PIF3-like
RefseqXP_020169800.11e-110transcription factor PIF3-like
TrEMBLA0A287VSB41e-117A0A287VSB4_HORVV; Uncharacterized protein
STRINGMLOC_10815.31e-117(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-25bHLH family protein