PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10595.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 32609.2 Da PI: 8.4606 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.5 | 6.4e-15 | 106 | 157 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr ++P++ ++++ + a+i+ A++Y+k+L+ MLOC_10595.2 106 QRRTHIAVERNRRRQMNEYLAALRLIMPQS---YAQRGDQASIVGGAINYVKELE 157 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.31E-14 | 104 | 161 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-14 | 104 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-17 | 105 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.79 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-12 | 106 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 111 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MALEAVVLAQ GHFGYGLQAP GLAPWCDMLG AGGFLEDDWD QQLLAAPVAP NAEDQWEPVS 60 SWDQSEASSE GKAAAPPEPA TAAAATGRRK RRRAKIVKNK EEVESQRRTH IAVERNRRRQ 120 MNEYLAALRL IMPQSYAQRG DQASIVGGAI NYVKELEQLL QSLEVQKSVK NRTGRSPFAS 180 SFTFPQYSAS CNITQATTAS DAGSGADSSG IKSEAGVADI EVTMVEGHAS LKVLARRRPK 240 QLLRLVAGLQ QLRIPALHLN VTTVDAMVLY SFSLKVIITF SESAMLLCLY SMFILHTHI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 92 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10595.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153287.1 | 1e-166 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 2e-63 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A287PRS4 | 0.0 | A0A287PRS4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_10595.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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