PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10538.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 337aa    MW: 38097.2 Da    PI: 5.5392
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10538.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.4e-11183228247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT +E++ ++++ + +G g+Wk I++++ +++t  q+ s+ qky
     MLOC_10538.2 183 RFWTIDEHKMFLRGLRVYGRGDWKNISKHFVTTKTHIQVSSHAQKY 228
                      56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.95965IPR017877Myb-like domain
PROSITE profilePS5129413.374177233IPR017930Myb domain
SuperFamilySSF466893.45E-16178234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-9179236IPR009057Homeodomain-like
SMARTSM007171.7E-7181231IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.1E-14181231IPR006447Myb domain, plants
CDDcd001671.28E-6185229No hitNo description
PfamPF002491.3E-7185228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDPFVNQGWT SSEEEEARSL IAEHNSHGIM NDENNNRHNN IVDAIHELFP SKTRQQVTNL  60
YINLEVESYM MNSREESYVG GNTQSVCPNN LVNNNFGMSG EGSGTSNICG INTMGDHVIG  120
GYGVREEEAA TIDRDGLIFG RSLEDARIAQ TNESMLIMDK NKMQVLENNV PSDQTVVPPR  180
QRRFWTIDEH KMFLRGLRVY GRGDWKNISK HFVTTKTHIQ VSSHAQKYFK RINKRASFGT  240
QRYSINDVGL DDDDLWAVNN SSSPSQMMGF NGLNNETSFG MHDPTSSSIV MNNQPHLWPP  300
VTYSQQENQQ PMWSEHQMLG STTVVMGDMR NSAPPSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10538.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169909.11e-82uncharacterized protein LOC109755402
TrEMBLM0UFQ90.0M0UFQ9_HORVV; Uncharacterized protein
STRINGMLOC_10538.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-17MYB family protein