PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10378.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | G2-like | ||||||||
Protein Properties | Length: 277aa MW: 30130.1 Da PI: 6.791 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.1 | 1.2e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQk+Rl MLOC_10378.2 1 MRVMGVKGLTLYHLKSHLQKFRL 23 789*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 9.3E-25 | 63 | 109 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MRVMGVKGLT LYHLKSHLQK FRLGKQHKEF GDHSVKDAME MQRNAASSSS GMMGRSMNDR 60 STHMNESLRM QMEVQRRLHE QLEVQKHLQM RVEAQGKYMQ SILEKAYQTL ASSDCATWPA 120 AAGYRSLGGS QAPALDLGGS MSFQDLTLYG GTSSHLDLQQ HMEMRPTMAM DSFLAFNESC 180 IGSAAVRSCS TGKSPMMWGN DDDEQAKSGG SADELLQMGP SCMMEAGGGS GGSMDPIMSL 240 SGDSLGSKGF DGPIINSKLE MRSSPQQVGS ERNLSYG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10378.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365142 | 0.0 | AK365142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031F05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179587.1 | 0.0 | myb family transcription factor APL-like | ||||
Swissprot | Q9SAK5 | 7e-49 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A287XRW9 | 0.0 | A0A287XRW9_HORVV; Uncharacterized protein | ||||
TrEMBL | F2DMM4 | 0.0 | F2DMM4_HORVV; Predicted protein | ||||
STRING | MLOC_10378.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2504 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.1 | 2e-44 | G2-like family protein |
Publications ? help Back to Top | |||
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