PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10322.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 459aa    MW: 49112.5 Da    PI: 6.2386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10322.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-16155200147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v + G ++W+tIar ++ gR++k+c++rw + 
     MLOC_10322.3 155 KGPWSPEEDAMLTNLVMRDGARNWTTIARGIP-GRSGKSCRLRWCNQ 200
                      79******************************.***********985 PP
2Myb_DNA-binding46.96.5e-15213252647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +eEd+ ++ a++ +G++ W++Ia+ +  gRt++ +k++w++ 
     MLOC_10322.3 213 EEEDQMIISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 252
                      578899***********.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.182150201IPR017930Myb domain
SuperFamilySSF466891.39E-27153249IPR009057Homeodomain-like
SMARTSM007172.3E-12154203IPR001005SANT/Myb domain
PfamPF002498.8E-15155200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-24156208IPR009057Homeodomain-like
CDDcd001672.99E-12157199No hitNo description
PROSITE profilePS5129423.197202257IPR017930Myb domain
SMARTSM007171.1E-12206255IPR001005SANT/Myb domain
CDDcd001675.77E-11209253No hitNo description
Gene3DG3DSA:1.10.10.602.7E-22209256IPR009057Homeodomain-like
PfamPF002493.8E-13213252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSSGTAVSPQ PRSSSPPTAA VSAHSRTAPA ADEPEAPDPA QPPPHHASQS PPPSVSDEAE  60
APAHPQPLPR HPLPSSSSSS PSTAADETQG PVQPPPQTQM HRPSSPSPST AEPQTPVLPQ  120
PNHSSPPLSG DDDDDDVVIT GAVGGASTAA DERVKGPWSP EEDAMLTNLV MRDGARNWTT  180
IARGIPGRSG KSCRLRWCNQ LDPQVKRKPF TAEEEDQMII SAHAIHGNKW ASIAKLLVGR  240
TDNAIKNHWN STLRRRYCTG TRCTRSASAE QPIREMSRAA SEERWPLSGP SSFSVMEVKE  300
APVQTVSESS ARALQIRDIN NFSSEAVERS YPVRPVATVG AFRPYSLGSA QPMQMEMSSS  360
TKFPTLQPFT PEIAVSKFAD TTCFATDVPN KCGHGCCSTE ERPRNNSLLG PEFKEFIDHP  420
PILSSSFASL VSEISSIAWM NSGMQSSNSG NLVQSNPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-361542566107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10322.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644270.0FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165805.10.0transcription factor MYB25-like
TrEMBLA0A3B6H1E90.0A0A3B6H1E9_WHEAT; Uncharacterized protein
STRINGMLOC_10322.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.18e-67myb domain protein 109