PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10278.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 307aa    MW: 33455 Da    PI: 9.7263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10278.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ ++ ++G g W+tI +          R+  ++k++w++
     MLOC_10278.1  5 KQKWTAEEEAALKAGIGKHGAGKWRTILKDPEfsnilRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.784161IPR017930Myb domain
SuperFamilySSF466894.34E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-13456IPR009057Homeodomain-like
SMARTSM007172.9E-7459IPR001005SANT/Myb domain
PfamPF002494.4E-7556IPR001005SANT/Myb domain
CDDcd116606.65E-19657No hitNo description
PROSITE profilePS5150421.532122193IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-13123197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-6123188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.0E-13127195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.2E-7130186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI GKHGAGKWRT ILKDPEFSNI LRYRSNVDLK DKWRNMNVTV  60
NASGSRDKVR TTATTTPTAK KPRSAPKQES QSMAVTSITS DGDDDVVDVK PIIKPIVTFT  120
TGNKSLSRLE NIILEAVKTL NEPTGSYKTA VANYIEEQYW PPADFDHVLS AKLNELTSSG  180
KLMKVNRKYR IAPSSSYLEG RSSKMVLLDD IKKEPTKVEK VERDGFTAHT KSQVDAELAR  240
MRNMSAEEAA AAAARAVAEA DAIMAEAEAA VREAEAAEAD AVAAQAFAEA AMLTLKNRSS  300
VKLIIRG
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10278.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2495640.0AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159514.11e-176single myb histone 5-like
SwissprotC0HIA31e-105SMH6_MAIZE; Single myb histone 6
TrEMBLM0UER90.0M0UER9_HORVV; Uncharacterized protein
STRINGMLOC_10278.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-61telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]