PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_10264.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 22931.3 Da PI: 6.6716 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 128 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+++dp +v++tYeg+H h MLOC_10264.2 128 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCDVKKRVERDRDDPAYVVTTYEGTHSHA 186 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-33 | 114 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-28 | 120 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.376 | 123 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 128 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 129 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAIVGAAPVL YQQQAQAVGD GCYFSFMSSY FSHGGASSNA SSTASSFSAT LGATPSAAPA 60 IAADPAMQFD ISEFLLDESG FAAPLPDGGA AGATAAMSAT AHTRSAAEVE RPRTERIAFR 120 TRSEIEILDD GYKWRKYGKK SVKNSPNPRN YYRCSTEGCD VKKRVERDRD DPAYVVTTYE 180 GTHSHASPST IYYASQDAAS GRFFVAGTHP PPGSLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-26 | 118 | 189 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-26 | 118 | 189 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_10264.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354386 | 0.0 | AK354386.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006P14. | |||
GenBank | AK363451 | 0.0 | AK363451.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015J14. | |||
GenBank | KC776271 | 0.0 | KC776271.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 19 (WRKY19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192531.1 | 1e-122 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A287GFN9 | 1e-156 | A0A287GFN9_HORVV; Uncharacterized protein | ||||
TrEMBL | F2CRY4 | 1e-157 | F2CRY4_HORVV; Predicted protein | ||||
STRING | MLOC_10264.2 | 1e-158 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-32 | WRKY DNA-binding protein 51 |