PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027344P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 86aa    MW: 9825.94 Da    PI: 8.4812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027344P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-09651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+   + + +a + + ++   +W+  ar +g g+t++++k ++  
   MELO3C027344P1  6 NWTAKQNKVFENALAIYDKDtpeRWHNLARAVG-GKTAEEVKRHYER 51
                     8********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.283257IPR017884SANT domain
SMARTSM007172.7E-7355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-5559IPR009057Homeodomain-like
CDDcd001679.69E-7653No hitNo description
PfamPF002491.6E-5651IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGSGSNWTAK QNKVFENALA IYDKDTPERW HNLARAVGGK TAEEVKRHYE RLVEDVNKIE  60
TGQVPFPNYR RSGPAARGFC FLDQEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-33273677RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6830911e-143LN683091.1 Cucumis melo genomic scaffold, unanchored_scaffold01279.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465612.14e-60PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB88e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3CPA09e-59A0A1S3CPA0_CUCME; protein RADIALIS-like 3
STRINGXP_008465612.12e-59(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]