PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027216P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 93aa    MW: 10254.5 Da    PI: 6.7899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027216P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000533174054
                    CHHHHHHHHHHHHHH CS
             HLH 40 KaeiLekAveYIksL 54
                     a++L +A+eYIk L
  MELO3C027216P1  3 TASVLSEAIEYIKFL 17
                    699**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-6236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-5225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
TDTASVLSEA IEYIKFLHEQ VSVLSTPYLK SGAVVQQQHQ QQRNEKSIKE GEGGKQDLRS  60
RGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6825538e-81LN682553.1 Cucumis melo genomic scaffold, unanchored_scaffold00714.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650539.12e-59PREDICTED: transcription factor bHLH123 isoform X2
SwissprotQ8GXT39e-40BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0A0L5646e-58A0A0A0L564_CUCSA; Uncharacterized protein
STRINGXP_004151277.18e-59(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]