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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C027196P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 24068.9 Da PI: 4.6314 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.8e-20 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+WvAeIr p++ r r++lg+++++e+Aa+a +aa +l+g MELO3C027196P1 14 TKYRGVRRRK-WGKWVAEIRLPNS---RDRIWLGSYDSPEKAARAFDAALFCLRG 64 69*****998.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.05E-30 | 14 | 74 | No hit | No description |
Pfam | PF00847 | 2.9E-13 | 14 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 15 | 73 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-35 | 15 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 15 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 15 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MNNNLSQTSA AGDTKYRGVR RRKWGKWVAE IRLPNSRDRI WLGSYDSPEK AARAFDAALF 60 CLRGPHAKFN FPEQPLPDIL NAHSLTAHQI QEFAAKFANE YDCHQNDVVD DVAPPPTTTT 120 TTTTAEDNCG NSPSSSNYNN VDWSFLDEIH DHHNPNPHSS SNFFPLYNDH FDNILTNDFY 180 QSSTTNNTND LYDAVSGDDD DTFSNQPFLW NF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 15 | 74 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN682478 | 0.0 | LN682478.1 Cucumis melo genomic scaffold, unanchored_scaffold00619. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466852.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A1S3CSD2 | 1e-156 | A0A1S3CSD2_CUCME; ethylene-responsive transcription factor ERF017-like | ||||
STRING | XP_008466852.1 | 1e-157 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-42 | ERF family protein |