PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026896P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 405aa MW: 43835.9 Da PI: 8.9154 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.6e-34 | 40 | 94 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFveav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl MELO3C026896P2 40 KPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 94 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.267 | 37 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-31 | 38 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.78E-17 | 39 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 40 | 95 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-9 | 42 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.7E-23 | 161 | 207 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL 60 GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TGMGWRVGTV 120 AVSVDQRLGE ANGAAAAAAA ARTNSIVVGP QPSSQSNKNL QISETIQMQI EVQKRLHEQL 180 EVQRHLQLRI ETQGKYLQTV LEKAQETLGR QNLGTVGLEA AKVQLSELVS KVSTQCLTAA 240 FPELHNQSQS QRVCAQQQSQ PPDCSMDSCL TSSEGGSKDQ QAAQQQQQQQ QVLLHNSHLA 300 LRPYADRASS GAPDHSLHGL SMSIGLVQGE KAGTEAYNGY STSEGQRLFG SKRTTKEAVL 360 EKETGFRYRM DLNNAGEDQL ISSNSNNDHT SSTTCKMFDL NGFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681839 | 0.0 | LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465330.1 | 0.0 | PREDICTED: uncharacterized protein LOC103502977 isoform X1 | ||||
Refseq | XP_008465331.1 | 0.0 | PREDICTED: uncharacterized protein LOC103502977 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-114 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S3CQ46 | 0.0 | A0A1S3CQ46_CUCME; uncharacterized protein LOC103502977 isoform X1 | ||||
STRING | XP_008465330.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-105 | G2-like family protein |
Publications ? help Back to Top | |||
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