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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026788P1 | ||||||||
Common Name | LOC103502869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 688aa MW: 74783.3 Da PI: 6.3364 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.7e-06 | 275 | 295 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ d+C +aHg MELO3C026788P1 275 PCPEFRK-GACPKADSCEYAHG 295 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 8.24E-15 | 68 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.0E-4 | 77 | 107 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.458 | 77 | 101 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.716 | 77 | 157 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.5E-9 | 77 | 144 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.1E-15 | 78 | 159 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.65E-13 | 79 | 175 | No hit | No description |
SMART | SM00248 | 0.62 | 112 | 144 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.11 | 112 | 147 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 8.1E-5 | 270 | 296 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.643 | 270 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 275 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 30 | 305 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.019 | 305 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MCSGSKNKVA STNSAMEARF LKLSDGGLFS ENSILLELSA SDDVEGFKRE VEEKDLDVDE 60 PSCWYGRGIG SKKMGFEERT PLMIAAMFGS SKVVKYLIET GKVDVNRACG SDLTTALHCA 120 TAGGSCSSLE TIKLLLDGSA DVDCVDAYGR KPVDLIVSAC RMVLNTGRKA MEMLLRGDGM 180 AGEADLSLYL GEDQQKITAS QFSKEGSDKK EYPVDVSLPD INSGIYGTDD FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGACPKADSC EYAHGVFESW 300 LHPAQYRTRL CKDETGCTRK VCFFAHKPDE LRPVYASTGS GMPSPRSLSS STGDMSTVSP 360 LALGSSSLSL PTTSTPPMSP LASVSSPKNG NLWQNKINLT PPALQLPGSR LKTTLSARDL 420 DLEMELLGLE KNASQLQHQQ QLIDEISRLS SPSYWNADVS RSAEMKPSNL DDMFGSLDSS 480 LLSQLQGASL KTPISAQVQS PTGLQMRQNM NQLRASYPSN NLSSSPVKKP SSFGFDSSSA 540 VAAAVMNSRS AAFSKRSQSF IDRAAVSRLP GFTGAANSAA TMSSHLSDWN SPDGKLDWGM 600 NGNDLNKLKK SASFGIRNNG IGTPTFAPPV EEPDVSWVNS LVKDVPSESF GLFGAEKRPY 660 NLKREINEML PSWMEQQLYA EQEQIVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF134812 | 0.0 | KF134812.1 Cucumis melo cultivar New Silverlit zinc finger CCCH domain-containing protein 29-like protein mRNA, complete cds. | |||
GenBank | LN681902 | 0.0 | LN681902.1 Cucumis melo genomic scaffold, anchoredscaffold00106. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001284654.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_008465206.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | U3R757 | 0.0 | U3R757_CUCME; Zinc finger CCCH domain-containing protein 29-like protein | ||||
STRING | XP_008465206.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 103502869 |