PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026599P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 244aa    MW: 27052.7 Da    PI: 8.848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026599P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.5e-1476122354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  MELO3C026599P1  76 KNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVERVKEL 122
                     58*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1371126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.78373122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1176122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-1276125No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1377131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MMQRHDHDQP QSSELYRLLA QTGAFSLGGA AFPPPPATTT QTMSNSSSSY YPLDNNKSPP  60
GVAAPSPHDR ALAALKNHKE AEKRRRERIN SHLDKLRTLL PCNSKTDKAS LLAKVVERVK  120
ELKNETLEIA ELESFPSETD EISVLSGEKS EDGRLVFKAS LCCEDRSDLI PDLNDILNSL  180
HLKTLRADIV TVGGRIRNVL LIAANDHHSI ESVHFLQNAL KSLIERSNSS LTSKRRRLVL  240
HHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818400.0LN681840.1 Cucumis melo genomic scaffold, anchoredscaffold00098.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464948.11e-177PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1S3CMN21e-176A0A1S3CMN2_CUCME; transcription factor bHLH106-like
STRINGXP_008464948.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]