PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026251P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 296aa    MW: 34411.1 Da    PI: 5.8398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026251P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.93.3e-091010834128
             NAM  34 ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....ktdWvm 123
                     ++ +diy+ eP ++  ++   e ++++fF++ +k++++  rk    + ++W+   k ++v+s++++lvg+ k + + + +  k        +W+m
  MELO3C026251P1  10 LPVIDIYTQEPPQIWeQCGGVEGRDVHFFTTLKKRKSRIIRKVG-SNGAMWSGESKATKVFSHDNTLVGTFKRFHYENSKMTKVDdcnnIYSWIM 103
                     6778**********73555568889******9998765444444.35678**************************9666555541111567*** PP

             NAM 124 heyrl 128
                      ey+l
  MELO3C026251P1 104 YEYTL 108
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.5631130IPR003441NAC domain
SuperFamilySSF1019414.45E-119130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGDFIPPIML PVIDIYTQEP PQIWEQCGGV EGRDVHFFTT LKKRKSRIIR KVGSNGAMWS  60
GESKATKVFS HDNTLVGTFK RFHYENSKMT KVDDCNNIYS WIMYEYTLQP NLVPQGVIHD  120
SFVLCMLRKK ILKQHKRAPC TRKEHLIPKR KRVEGQISID RVENECFVNT RQFSELLLNG  180
CDLEEQSQLL FQESGHQPLM INYSGETGSN NRQYHNDMGL ISECQPMQMK PWLKDMTFRE  240
ICPTMEMMNP DQNCSIQDED ALFAKEIEMA FEQQCNDDVA LSYKENDSNH DNENY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818140.0LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A0LWA53e-98A0A0A0LWA5_CUCSA; Uncharacterized protein
STRINGXP_004170453.11e-101(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.18e-07NAC domain containing protein 96