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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026161P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 841aa MW: 93176.9 Da PI: 6.5435 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.5e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ MELO3C026161P1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 238 99*****************************7333.34459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ MELO3C026161P1 239 GELRVGVRRA 248 99*****996 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 273 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++++GmRfkm+fe+e+++e+r++Gt++g +d+dp rW++SkWr+Lk MELO3C026161P1 273 AWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLK 355 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-41 | 144 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-40 | 144 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.08E-22 | 145 | 247 | No hit | No description |
Pfam | PF02362 | 1.1E-21 | 147 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-37 | 273 | 355 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.1E-11 | 704 | 800 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.21E-11 | 714 | 792 | No hit | No description |
PROSITE profile | PS51745 | 25.528 | 715 | 799 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MASSEVSINP NSASFNDHAD STKDTSDPPN ALSPRDADIA LYTELWNACA GPLVSVPREN 60 ERVFYFPQGH IEQVEASTSQ VADQQMPVYN LPSKILCRVI NVHLKAEPET DEVFAQITLL 120 PEANQDEHAV DKEPPPPPPR RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR 180 QPPTQELVAK DLHGNEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE 240 LRVGVRRAMR QHGNVPSSVI SSHSMHLGVL ATAWHAISTG TMFTVYYKPR TSPSEFIVPY 300 DQYMESIKKS YTIGMRFKMR FEGEEAPEQR FTGTIIGCED ADPKRWKDSK WRCLKVRWDE 360 TSTISRPEKV SPWKIEPALA PPALNPLPMT RPKRPRSNMV STSPDSSVLT REGSSRVTVD 420 PSPASVFTRV LQGQEFSTLR GNFIDGSDPD VAEKSVMWPP SLDDEKVDVV STSKKHGADS 480 WIPPGRSEPT YADLLSGFGA DMDSSLGVRA AMGDSAVVTA NSIRKHAMEQ DGKFSFLGGS 540 SWSVLPSGLS LNLVDSSQKG HIRAGDLSYQ VRGNATFNGF GDHSISHCPR TEQPHGNWLM 600 PPPSSHFDYP IHSSELMSKP MLFQNQDILK PKDGNCKLFG ISLVKNPAIP DPVGLNRNMM 660 NEADVMHSNV HQIHSIESGL KSELPRGSKL ADKSVAISEA DKLQQTCKSQ GTSARSCTKV 720 HKQGIALGRS VDLSRFNNYD ELVAELDQLF EFGGELLAPK KNWLIVYTDD EGDMMLVGDD 780 PWREFCGMVR KIFIYTREEV QKMNPGSLNL KGDENPSVEG EEAKETKSQA VPSMSAPESS 840 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 40 | 377 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 40 | 377 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 40 | 377 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323408 | 0.0 | KU323408.1 UNVERIFIED: Trichosanthes dioica clone TdARF_6 auxin response factor-like mRNA, partial sequence. | |||
GenBank | KU323422 | 0.0 | KU323422.1 UNVERIFIED: Trichosanthes dioica clone TdARF_30 auxin response factor-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464365.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Refseq | XP_008464366.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q2LAJ3 | 0.0 | ARF2A_SOLLC; Auxin response factor 2A | ||||
TrEMBL | A0A1S3CLA6 | 0.0 | A0A1S3CLA6_CUCME; Auxin response factor | ||||
TrEMBL | E5GBL7 | 0.0 | E5GBL7_CUCME; Auxin response factor | ||||
STRING | XP_008464365.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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