PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025940P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 416aa    MW: 45648.8 Da    PI: 5.2036
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025940P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.3e-06445540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +C+ +++++   +C+++  +lC +C  + H+       Ht++
  MELO3C025940P1  4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHTRT 45
                    7*****************************657888889876 PP
2zf-B_box17.58.8e-064790541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41
                     C++++ ++ +  C + ++ lC++C  ++H g        H++++
  MELO3C025940P1 47 LCERCHLQPSTVRCIEERVSLCQNCDWTGH-GtstlasssHKRQT 90
                    7*****************************.55888888888766 PP
3CCT608e-21358401144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ 
  MELO3C025940P1 358 RNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAG 401
                     999**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000218.36E-7347No hitNo description
SMARTSM003361.7E-9447IPR000315B-box-type zinc finger
CDDcd000210.00444791No hitNo description
PfamPF062033.9E-16358400IPR010402CCT domain
PROSITE profilePS5101715.17358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGFMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPSTVRC  60
IEERVSLCQN CDWTGHGTST LASSSHKRQT INCYSGCPSA AELSCIWSFV LDVPSVNDAC  120
EKELGLMSIA ETDLTGAWSL SENNAGQRMP RSTEASDVCS REKSNVLVGS SSLFGSRPHT  180
SDQSVELDNV ALPKFCCPGT KVAEFCGEDA DLYKEFDMDE MDLNLENYED LFSMSLNHSE  240
EFFENGGIDR FFEAKGLSFE DSVSHSAVAA EGSSVGVVQQ MQPAYSNGAS ADSVMSTKTE  300
PILCFNSRQA QSGMSFSGLT GESSAGDHQD CGASSMFLMG EPPWCAPSTE SSFPSTDRNS  360
AVQRYKEKKK TRKFEKTVRY ATRKARADVR RRVKGRFVKA GEAYDYDPLN QARSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819170.0LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464151.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9SSE51e-143COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S3CLA30.0A0A1S3CLA3_CUCME; zinc finger protein CONSTANS-LIKE 9-like isoform X2
STRINGXP_008464148.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-121CONSTANS-like 9