PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025844P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 693aa    MW: 75312.9 Da    PI: 6.6596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025844P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07276296526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ GtC+ Gd C +aHg
  MELO3C025844P1 276 PCPEFRK-GTCRQGDACEYAHG 296
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.58E-1372150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.17575150IPR020683Ankyrin repeat-containing domain
PfamPF127968.6E-775142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.004975105IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-1476168IPR020683Ankyrin repeat-containing domain
CDDcd002044.75E-1277150No hitNo description
PROSITE profilePS5008811.648110145IPR002110Ankyrin repeat
SMARTSM002480.23110142IPR002110Ankyrin repeat
SMARTSM003565.4E-5271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784276298IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035630306329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.103306330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MMCNGCNRKS ASPNFAMDGG FKRGGLGFCI SVLLEFSATD DLIGFRSAVE EDGHDIDEAS  60
LWYGRIFGSK KMGYEERTPL MVAAMFGSLN VLSYILHSGR VDVNRACGSD GVTTLHCAVA  120
GGSAVVDQVV KLLLDASADV SAVDANGNRP GDLIAPDFTS AFHSRKKTLQ QLLNGHEEGL  180
SSSEAIFYER ETLEPLELST LRASRDGTEK KEYPVDLSLP DIKNGIYSTD EFRMYTFKIK  240
PCTRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGTCRQGDA CEYAHGIFEC  300
WLHPAQYRTR LCKDETGCTR KVCFFAHKPE ELRPLYASTG SAVLSPRSIC GSSLDIASIS  360
PLTLGSPSAL IPPSSTPPLT PSGVSSPMGG TVWQTQCNIA PPTLHLPGSR LKASLSARDV  420
DLDVELLGLE SQRRRQQQLM DEMSCLPSPS RWNNGIPTPA SFPSPRSRNG ELNGLGGMKP  480
TKLEDIFGSV DPAILPQLQG LSLDSVGSQV QSPSGIQMRQ SLNQSFLSSY GNSIGSPPPR  540
LSQPSVSTAA SVLSSRAAAF AKRSQSFIER SMVSRHTGLS PPATSTTTMP LNLSDWGSPD  600
GKLDWGIRGE ELNKLRKSAS FGFRNNCTSS PVTSTMHTTA PEPDVSWVQS LVKDAPSENA  660
VQLSMDEQQQ LLCHINNGDS KQMYMEQEQL VA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464034.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1S3CL130.0A0A1S3CL13_CUCME; zinc finger CCCH domain-containing protein 66
STRINGXP_008464034.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein