PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025769P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 888aa MW: 97027.9 Da PI: 5.3106

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025769P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	86	113	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 ++t+lC++f+r C++G C++aHg+ MELO3C025769P1 86 WRTSLCSYFRRHSgSCSHGTECRYAHGE 113 79*******889**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.3E-12	80	119	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.55E-6	84	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-4	85	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.549	85	114	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-5	86	113	IPR000571	Zinc finger, CCCH-type
CDD	cd00590	5.51E-6	170	235	No hit	No description
Gene3D	G3DSA:3.30.70.330	4.5E-5	173	235	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	7.0E-6	173	247	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS51687	42.953	296	887	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	2.03E-49	299	324	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.03E-49	356	495	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.03E-49	534	650	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	2.9E-64	548	650	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF13847	2.6E-9	594	652	IPR025714	Methyltransferase domain
CDD	cd02440	4.77E-7	596	650	No hit	No description
Gene3D	G3DSA:3.40.50.150	2.9E-64	771	826	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF05958	1.6E-6	773	822	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	2.03E-49	774	836	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
PROSITE pattern	PS01230	0	782	814	IPR030390	RNA methyltransferase TrmA, active site
Gene3D	G3DSA:3.40.50.150	2.9E-64	862	887	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.03E-49	871	887	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0000166	Molecular Function	nucleotide binding
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MAASSIEETL LTQPPKTSDD HLQTSMDVQD DTENLTVTTA PPPESLPDQT DLQSDGASVA 60 GEKRKRTDPD SDAAKPNSDP STNPLWRTSL CSYFRRHSGS CSHGTECRYA HGEEELRQRP 120 DKSWDPTSER AKKVMKVGEE VKEEEVMMTE VVVDDDEVGN DGRDNELSKC LVHLPTKWNS 180 DNLRNYLNEQ SVLFKSAKKK KGMTVGFVSF ESTEQLRSSV EELQGKIIGK KNLKVADVIP 240 RSFEKKIKSS MDCDNSSVSS AAFSLPSDDG QDAGNINDGS STPNDSVLKG KSAREVVAPL 300 AHMSYSDQLD HKKNSLLHVL KKLTRNARKA CPHGVSLPEW ILKSRDIGGI ACSFEGIIES 360 PIINGYRNKC EFSVGYSLEG KPTVGFMLGN FREGVTAVEE PENCPNVSRI SCKYASIFQE 420 FLQSSSLPIW NRFKNIGFWR QLTVREGRAP GKLIDSDNSD ASISEVMLIV QVCSVGVESE 480 LMTSEFKRLA QAFAEGSVAN SPPLPLTALV IQHHQGISNA APADTPLQPL TIPKVHSAEL 540 EATNDAVEPR IHDYISNLKF CISPTAFFQV NTLAAEKLYS LAGDWAELGP DTLLFDICCG 600 TGTIGLTLAH RVGMVVGIEM NASAVSDAQR NAEINGINNC KFICAKAEDV IGSLLKEYLK 660 GTKKEEEIVC DSNGSDGISS TSKQNEEISG ASEKNDETPG ASEKSGEIQD AKEKSDEVSE 720 TGERNALIND KDRDPVVNHV PENDANGPET SEVASEKNGS QHSCCNPENG TKQFKNVVAI 780 VDPPRGGLHP IVTKVLRTHT HLRRLVYISC NPESLMANAI ELCTPSSEKI EKGNKNNRGW 840 RNMGSAGLAR HRVKSMPISE PFRPVKAMAV DLFPHTPHCE MVMLLER*

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MAASSIEETL LTQPPKTSDD HLQTSMDVQD DTENLTVTTA PPPESLPDQT DLQSDGASVA  60
GEKRKRTDPD SDAAKPNSDP STNPLWRTSL CSYFRRHSGS CSHGTECRYA HGEEELRQRP  120
DKSWDPTSER AKKVMKVGEE VKEEEVMMTE VVVDDDEVGN DGRDNELSKC LVHLPTKWNS  180
DNLRNYLNEQ SVLFKSAKKK KGMTVGFVSF ESTEQLRSSV EELQGKIIGK KNLKVADVIP  240
RSFEKKIKSS MDCDNSSVSS AAFSLPSDDG QDAGNINDGS STPNDSVLKG KSAREVVAPL  300
AHMSYSDQLD HKKNSLLHVL KKLTRNARKA CPHGVSLPEW ILKSRDIGGI ACSFEGIIES  360
PIINGYRNKC EFSVGYSLEG KPTVGFMLGN FREGVTAVEE PENCPNVSRI SCKYASIFQE  420
FLQSSSLPIW NRFKNIGFWR QLTVREGRAP GKLIDSDNSD ASISEVMLIV QVCSVGVESE  480
LMTSEFKRLA QAFAEGSVAN SPPLPLTALV IQHHQGISNA APADTPLQPL TIPKVHSAEL  540
EATNDAVEPR IHDYISNLKF CISPTAFFQV NTLAAEKLYS LAGDWAELGP DTLLFDICCG  600
TGTIGLTLAH RVGMVVGIEM NASAVSDAQR NAEINGINNC KFICAKAEDV IGSLLKEYLK  660
GTKKEEEIVC DSNGSDGISS TSKQNEEISG ASEKNDETPG ASEKSGEIQD AKEKSDEVSE  720
TGERNALIND KDRDPVVNHV PENDANGPET SEVASEKNGS QHSCCNPENG TKQFKNVVAI  780
VDPPRGGLHP IVTKVLRTHT HLRRLVYISC NPESLMANAI ELCTPSSEKI EKGNKNNRGW  840
RNMGSAGLAR HRVKSMPISE PFRPVKAMAV DLFPHTPHCE MVMLLER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5xj1_A	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5xj2_A	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5xj2_B	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5xj2_C	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5xj2_D	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5zq0_A	3e-18	552	662	263	377	Uncharacterized RNA methyltransferase SP_1029
5zq1_A	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5zq8_A	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5zq8_B	3e-18	552	662	262	376	Uncharacterized RNA methyltransferase SP_1029
5zth_A	3e-18	552	662	263	377	Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681922	0.0	LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463939.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 24
Swissprot	Q8L7S3	0.0	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A1S3CKC6	0.0	A0A1S3CKC6_CUCME; zinc finger CCCH domain-containing protein 24
STRING	XP_008463939.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8854	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]