PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025623P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 284aa MW: 31194.7 Da PI: 7.7286

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025623P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	149	194	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ MELO3C025623P1 149 KRVKRILANRQSAQRSRVRKLQYISELERNVTTLQTEVSALSPRVA 194 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-13	145	209	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.749	147	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-11	149	203	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-14	149	200	No hit	No description
Pfam	PF00170	7.2E-10	149	194	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.63E-23	150	200	No hit	No description
PROSITE pattern	PS00036	0	152	167	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MPNNLSSPPP PPPSSSSSPA ASWLDDFLDF STARRGLHRR SISDSIAFLE TTTTTTAAIT 60 NPFSDQCRNS SSAALLHPPP PFDRLDDDQL MSMFSDDISI PLPPNSPSNP STPSDQNSNN 120 DDKKNTPTDE QSQPPPPPSS AVDNSIDPKR VKRILANRQS AQRSRVRKLQ YISELERNVT 180 TLQTEVSALS PRVAFLDHQR LILNVDNSAL KQRIAALAQD KIFKDAHQEA LKKEIERLRQ 240 VYHQQSMKKM SNNQNGAMQP QAPSPGEGTP PKAAETEKEK ALS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681862	0.0	LN681862.1 Cucumis melo genomic scaffold, anchoredscaffold00081.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146037.2	1e-155	PREDICTED: basic leucine zipper 34
Swissprot	Q9M2K4	3e-87	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	E5GBG1	1e-156	E5GBG1_CUCME; BZIP transcription factor
STRING	XP_004146037.1	1e-155	(Cucumis sativus)
STRING	XP_004163639.1	1e-155	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2011	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-64	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]