PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025338P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 292aa    MW: 33337.8 Da    PI: 5.4536
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025338P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.83.4e-33141062103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d+ ++++isw + +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ +ll++
  MELO3C025338P1  14 FVLKTYQMVNDPLTDSFISWGSANNSFIVLDPLHFSHTLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQFQLLKN 99 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  MELO3C025338P1 100 IVRRKQS 106
                     ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.9E-4910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3511103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-3211103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-2814103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEPNSSNKDI VAPFVLKTYQ MVNDPLTDSF ISWGSANNSF IVLDPLHFSH TLLPAFFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEWFL RGQFQLLKNI VRRKQSCNKY LIGDQMGDEE  120
LVTEIARLRK EQRALEEQLE GMKKRLETTE KRPQQMMAFL HKVVEDPEIL PRIMLHKDPT  180
RLQLSEKKRR LMISSSSSSP STTTLTEGDE IEEDSNNPQD FGPNFSSPEV SGPWFLREAE  240
GNLGIPIPPV PAIDLGISSN GGERKYLTEM TVEETHPPPP PYPFSLFGCG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24310318129Heat shock factor protein 1
5d5v_B7e-24310318129Heat shock factor protein 1
5d5v_D7e-24310318129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818100.0LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463387.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S3CJ610.0A0A1S3CJ61_CUCME; heat stress transcription factor C-1-like
STRINGXP_008463387.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-82heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]