PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025282P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 847aa    MW: 92420.9 Da    PI: 6.853
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025282P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.24.2e-1294668252374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alpps  ++++s++ ++a+++f+ +sP++kfsh+
  MELO3C025282P1 466 LTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQIFNGISPFVKFSHF 560
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e le+tg+rL++fAe+lg+pf+f + va+++ +l+l
  MELO3C025282P1 561 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQEVLEATGKRLTEFAEKLGLPFDFFP-VADKIGNLDL 650
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer+ vE
  MELO3C025282P1 651 ERLNVSKREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVE 738
                     ****************9..999988888888....**********************.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW+
  MELO3C025282P1 739 QQLLSREIRNVLAVGGPSRSGEVK-FQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWK 825
                     ******************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.786439805IPR005202Transcription factor GRAS
PfamPF035141.5E-126466825IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MAAYALLNDS TPRGVNGGFD DSPLTSASTN SNGSDELNHQ QIVQVPQPRL PVGKMVRKRI  60
ASEMEIEGQS TAERRRRRRR RRSLASDRPF GENKTNMNYC SSSSNPSHGG NHSTVVHNLT  120
ALTSVVIEGS NLSNPPSGSD ATVSSTTSNN NLLDSTLPVL RPQPHHHHLQ NPAVCGFSGL  180
PLFPPESNHH HNKLNTRNNP FPLPNPSQVL LHNPPTTATT SIIAAASSPM DDSSATAWID  240
GIIKDLIHSS TAISIPQLIQ NVREIIYPCN PNLANLLEFR LRTLTDPSVP NFATEDHRVR  300
KSPLPLPAPV AGLGLQQRQF NQEQHEQEHD CSGLKLNLDS TSLHNLSNFP SQPPFHEPYL  360
QWGATPPPVP TPSAAAAGED ALQRLPGHHQ LNLSSVTPSS LVPLNHVPSK PQSEQQNSST  420
KAAAAAQPAP APPSTSNNPS ATALLIREIK EEMRQQKRDE EGLHLLTLLL QCAEAVSADN  480
LEEANKMLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGIYAALPP SLVPHTHSQK  540
IASAFQIFNG ISPFVKFSHF TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP  600
GGPPYVRLTG LGTSQEVLEA TGKRLTEFAE KLGLPFDFFP VADKIGNLDL ERLNVSKREA  660
VAVHWMQHSL YEVTGSDSNT LWLLQRLAPK VVTVVEQDLS HTGSFLGRFV EAIHYYSALF  720
DSLGVSYGEE SEERHLVEQQ LLSREIRNVL AVGGPSRSGE VKFQNWREKL QQSGFKGISL  780
AGNAATQATL LLGMFPSDGY TLVEDNGTLK LGWKDLCLLT ASAWKPPFHH HAAAAVAVTN  840
NHIPRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04508264380Protein SCARECROW
5b3h_A0.04508263379Protein SCARECROW
5b3h_D0.04508263379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15678RKRIASEMEIEGQSTAERRRRRR
27381RRRRRRRRR
37481RRRRRRRR
47581RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8703060.0AJ870306.1 Cucumis sativus mRNA for SCARECROW (scr gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463324.20.0PREDICTED: protein SCARECROW 1
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A1S3CJ050.0A0A1S3CJ05_CUCME; protein SCARECROW 1
STRINGXP_004163982.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein