PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C025116P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 227aa MW: 25351.7 Da PI: 10.0498 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.8 | 2.9e-29 | 152 | 203 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ + MELO3C025116P1 152 PRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 203 9*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.45E-15 | 149 | 205 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 150 | 203 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.9E-23 | 152 | 204 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-6 | 153 | 201 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MPNIQRVINI ESSSSSSSSS SSSSSTPFLD LSLQISPPNS IINHSTFPTN TIETSNGSTN 60 QLFTHHYTNK SLNQINNGVS LDHHHACPIN GFPIHPNPSI FYPKQRLTSP AFSGASSSSS 120 ISTFTLPPPY LHYHLDSDRL SAVARGRSMR APRMRWTSSL HAQFVHAVEL LGGHERATPK 180 SVLELMDVKD LTLAHVKSHL QVFFFSFFFF HIIFNFYIKF KLLMYK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-16 | 153 | 203 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681894 | 0.0 | LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463176.1 | 1e-144 | PREDICTED: probable transcription factor KAN2 | ||||
TrEMBL | A0A1S3CJ01 | 1e-143 | A0A1S3CJ01_CUCME; probable transcription factor KAN2 | ||||
STRING | XP_008463176.1 | 1e-143 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16560.1 | 4e-31 | G2-like family protein |