PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 199aa MW: 22905.8 Da PI: 6.6833

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C024507P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	43	96	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle+Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k MELO3C024507P1 43 KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQPRQIAVWFQNRRARWK 96 56779************************************************9 PP
2	HD-ZIP_I/II	120	1.2e-38	42	134	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rls++q+++LE+sF+ee kL+p+rK++l+ eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++d++++e+++L++ev +Lr+ l+e MELO3C024507P1 42 QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSMELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDTISKEKHNLQQEVMKLRNMLRE 134 69**************************************************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.989	38	98	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-19	40	100	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-18	41	102	IPR001356	Homeobox domain
CDD	cd00086	1.35E-16	42	99	No hit	No description
Pfam	PF00046	1.3E-17	43	96	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-21	44	105	IPR009057	Homeodomain-like
PRINTS	PR00031	5.9E-5	69	78	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.9E-5	78	94	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.6E-9	98	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVIKEETDRY SQPSSVQLVI ETATRVATGE GKQNMAGGVD HQKKKRLSQD QLEALERSFQ 60 EEVKLDPDRK MKLSMELGLQ PRQIAVWFQN RRARWKTKQL EHLYDTLKQQ FDTISKEKHN 120 LQQEVMKLRN MLREQTTRNA GSMAHTDISG EETTVECTSV EILSCNNYMY NVEDFNQISA 180 SAPPFWWGAE AAHLPSYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	98	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681876	0.0	LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462523.1	1e-134	PREDICTED: homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q9LZR0	6e-46	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1S3CIQ6	1e-133	A0A1S3CIQ6_CUCME; homeobox-leucine zipper protein ATHB-22-like
STRING	XP_008462523.1	1e-134	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-48	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]