PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024355P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 556aa    MW: 62272.7 Da    PI: 7.7812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024355P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.44.3e-781625472374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl...fsevsPi 90 
                     ++lL  cA+a+ +gd++++++lL+ l+elasp+gd+++Rla + ++ALa +l++ s+s+ +++ +++ ++  +  s++  ++++    f+evsP+
  MELO3C024355P1 162 EQLLNPCANAIVKGDATRVHHLLCVLQELASPTGDANHRLADHGLRALAYHLSSnSSSSSFSSYSSTVSPI-TfaSTDPRFFQRSlikFHEVSPW 255
                     689*************************************************9954443333332222222.2334443333333477******* PP

            GRAS  91 lkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAee 171
                     + f + +aN+ Il  +++e    + +H++D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T++++  ++               ++ +rL +fA++
  MELO3C024355P1 256 FAFPNNIANSSILHILSEEsnrpRNLHVLDIGVSHGVQWPTLLEALTRRSgGPPPLIRLTVIAPTVEHdqntetpfsIGPPGDNISSRLLSFAKS 350
                     ****************9998888899************************55566*******9987777776777666667899*********** PP

            GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealey 263
                     l++++++n l  ++l++l+ ++++ +++E l+V+++++lh+l    +s ++er+e+L+ +++++Pk v+++e+++ ++ +   +F  +f + +ey
  MELO3C024355P1 351 LNINLQINRLDIHSLQSLNSQAINKSRDEILIVCSQFRLHQLK---HSAPDERQEFLQNLRKMEPKAVILSENNMGCSCSkcvNFEMGFRRGVEY 442
                     **********999*****************************8...77777789********************8885443569*********** PP

            GRAS 264 ysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                     +++++ds+ +a  +reseer+++E e  +++++nv   eg++    +e+++kW er++++GF+  +++e++ ++a++ +r+++ ++++r+e+++g
  MELO3C024355P1 443 VWKFLDSTsAAFKGRESEERRVMEGE-AAKALRNV---EGEM----NEEKGKWCERMRNVGFERKRFGEDTIDTARASMRRYDnNWEMRMEDKDG 529
                     ********545555666777777766.44444443...4444....7889*********************************9999******** PP

            GRAS 357 slvlgWkdrpLvsvSaWr 374
                     ++ l Wk++p+ ++S W+
  MELO3C024355P1 530 CVGLWWKGQPVSFCSLWK 547
                     *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.952135526IPR005202Transcription factor GRAS
PfamPF035141.5E-75162547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTIEETGPDH PSDHILDWLE DSVPFFSSFL DETSNSSSIN CYQWWDENQD TGEDLINGCL  60
SNSPTTVVST RQPNTPTSHH LPPSDLTKKR KAPDDSVHKK SQTHQNPRKN QNNQSKNIAD  120
KGSGAVEGVT VIKKSVGNKK NASKSTGNNY NNGSNKEGRW AEQLLNPCAN AIVKGDATRV  180
HHLLCVLQEL ASPTGDANHR LADHGLRALA YHLSSNSSSS SFSSYSSTVS PITFASTDPR  240
FFQRSLIKFH EVSPWFAFPN NIANSSILHI LSEESNRPRN LHVLDIGVSH GVQWPTLLEA  300
LTRRSGGPPP LIRLTVIAPT VEHDQNTETP FSIGPPGDNI SSRLLSFAKS LNINLQINRL  360
DIHSLQSLNS QAINKSRDEI LIVCSQFRLH QLKHSAPDER QEFLQNLRKM EPKAVILSEN  420
NMGCSCSKCV NFEMGFRRGV EYVWKFLDST SAAFKGRESE ERRVMEGEAA KALRNVEGEM  480
NEEKGKWCER MRNVGFERKR FGEDTIDTAR ASMRRYDNNW EMRMEDKDGC VGLWWKGQPV  540
SFCSLWKLGI KSNAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3615854784473Protein SHORT-ROOT
5b3h_B5e-3715854730419Protein SHORT-ROOT
5b3h_E5e-3715854730419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462311.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A1S3CGQ30.0A0A1S3CGQ3_CUCME; nodulation-signaling pathway 1 protein
STRINGXP_008462311.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-161GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]