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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MELO3C024138P2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
ARF |
Protein Properties |
Length: 546aa MW: 61094.1 Da PI: 7.9561 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MELO3C024138P2 | genome | MELONOMICS | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 57.5 | 2.4e-18 | 7 | 71 | 33 | 99 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++el+v+v+r+
MELO3C024138P2 7 TQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELRVGVRRQ 71
458999*********************************************..3489999****996 PP
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2 | Auxin_resp | 101.4 | 1.2e-33 | 96 | 175 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t++ F v+Y+Pr+ s+F+++++k+++++k+ + vGmRfkm+fe+e+s+err++Gt+vgv d++p +W++SkWrsLk
MELO3C024138P2 96 ASHAVRTQTYFVVYYKPRT--SQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSP-QWSDSKWRSLK 175
689***************6..9*************************************************.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MSQSTPTQEL AAKDLHGYEW KFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD 60 NGELRVGVRR QARQQSLMPS SVISSHSMHL GVLATASHAV RTQTYFVVYY KPRTSQFIIS 120 LNKYLETVKN GYEVGMRFKM RFEGEESPER RFTGTIVGVG DMSPQWSDSK WRSLKIQWDE 180 PATIQRPERV SPWEIEPFVP SASLNFTHPA IKSKRARPVE IPPPEITSGS APSGFWLQGS 240 TIPHEISQIS GGTNEVQSSN NRVVWALGQR KLDSNSSHCN PIANVEGIWP SPPLNISLNL 300 YPDSTFEREL VQKQPQSSPY SSSVTSKPSS DLIHPDQLEK GSKPDISLGC RIFGIDLKKN 360 SSIVPTNSSI VPTLERRSSC LLMVSDGAPE PVTMAVVTPQ VDAGNLSQHS KEQQLSSELS 420 TKGTQTKHIS NLSSRTRTKV QMQGVAVGRA VDLTTLEGYE DLIDELENVF EIKGELREVN 480 KWSIVFTDDE NDMMLVGDDP WPEFCKMVKR IFIYSSEEVK KMSRESKIVC PSFLDSLDSE 540 RKTES*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldw_A | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldw_B | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldx_A | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
4ldx_B | 5e-97 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |