PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C023937P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28885.6 Da PI: 9.326

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023937P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.5	3.5e-16	134	188	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++ q Lee F++++++ +++ e A++l+L rqV vWFqNrRa+ k MELO3C023937P1 134 RKKLRLSRRQSAFLEESFKQHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTK 188 6778899**********************************************98 PP
2	HD-ZIP_I/II	113.1	1.8e-36	134	224	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rls+ q+++LEesF+++++L p++K e+ar+L+l+prqv+vWFqnrRARtk+kq E+++e+Lk+++ +l+++n++L+ke ++Lr +lk MELO3C023937P1 134 RKKLRLSRRQSAFLEESFKQHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTKLKQNEVECEYLKKCCATLTQQNTKLQKELQDLR-ALK 224 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.88E-16	126	191	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.05	130	190	IPR001356	Homeobox domain
SMART	SM00389	6.1E-13	132	194	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.9E-16	133	194	IPR009057	Homeodomain-like
CDD	cd00086	3.03E-12	134	191	No hit	No description
Pfam	PF00046	1.1E-13	134	188	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	165	188	IPR017970	Homeobox, conserved site
SMART	SM00340	2.2E-16	190	233	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MELDLRLGND PSPSSHPTPL HFSLSFSSLE LQHQARNHIH QNHLLLHSLN SPPPPAASAS 60 RPSSPTERSR GKVFTEVISE ATADGGGEIG RRSSKGIVWS IGKNNSEEER EGKSENEEEE 120 EQEEMDMNMI SGGRKKLRLS RRQSAFLEES FKQHHTLYPK QKLEVARRLN LRPRQVEVWF 180 QNRRARTKLK QNEVECEYLK KCCATLTQQN TKLQKELQDL RALKTTHSLF INSPPTTLTL 240 CASCERAVAT PISR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	190	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681835	1e-154	LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBank	LN713258	1e-154	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461760.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11-like
TrEMBL	A0A1S3CFB9	0.0	A0A1S3CFB9_CUCME; homeobox-leucine zipper protein HOX11-like
STRING	XP_008461760.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31515	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-53	homeobox from Arabidopsis thaliana