PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023684P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRAS

Protein Properties

Length: 571aa MW: 64083.5 Da PI: 4.636

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023684P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	434.6	7.6e-133	201	570	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ LlecA a+s+++ e+a+a++++l+ +s +gdp qR+aay++e+Laarl++s++ lykal+++e + ss++laa+++++ev+P++kf+++ MELO3C023684P1 201 RQMLLECAFAISEENYEEASAMIKQLRCVVSIQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFM 292 689***************************************************************9...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN aIlea++ e+++HiiDfd+sqG+Q++ L+q +a+ p++pp+lR+Tgv++pes+ l+++g+rL+++A++l+vpfef++ +a++ +d+ MELO3C023684P1 293 AANCAILEAAKDEKKIHIIDFDVSQGTQYIKLIQMFAALPGKPPHLRLTGVDDPESVqrPIGGLRHIGQRLEQLAKALRVPFEFRA-IASNASDV 386 ***************************************************99888899*******************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++L+ kpgEal+Vn+++ lh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yy+a++dsl+a+lpr+s++ri+ MELO3C023684P1 387 TPSMLASKPGEALIVNFAFLLHHMPDESVSTVNQRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRIN 481 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE ++l+++ivn+vaceg+er+er e ++kWr+r+++aGF++ ++s+++++ ++ l++++ ++ +++ ee g+l +gW++++L+++SaWr MELO3C023684P1 482 VESQCLAKDIVNIVACEGEERVERYEVAGKWRARMMMAGFTSCSMSQNVTDPIRKLIEEYCDR-FKMYEEMGTLHFGWEEKSLIVTSAWR 570 *********************************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.756	174	551	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-130	201	570	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MSLVRPSDPS PLSYGSRKLY SLKGTSSAPD LSTQRFGSEK HRTMYMNDTY CSESYEKYFL 60 DFPIEELAIS GISTNSCHPN AWVDSLSPLC NSFTLFDACQ STSDSACLES TSPEELDFED 120 DQVRRKLQEL ERDLLGDPDA ADYDVEMLTN GQNMEIDSEW ANSIQDTLLH DSPKESSSSD 180 SNFSTISSNK DASQLSSQNP RQMLLECAFA ISEENYEEAS AMIKQLRCVV SIQGDPSQRI 240 AAYMVEGLAA RLLESGKCLY KALRCKEPPS SDRLAAMQIL FEVCPCFKFG FMAANCAILE 300 AAKDEKKIHI IDFDVSQGTQ YIKLIQMFAA LPGKPPHLRL TGVDDPESVQ RPIGGLRHIG 360 QRLEQLAKAL RVPFEFRAIA SNASDVTPSM LASKPGEALI VNFAFLLHHM PDESVSTVNQ 420 RDRLLRMVKS LNPKLVTVVE QDMNTNTTPF FSRFVEAYNY YAAVYDSLDA TLPRDSQDRI 480 NVESQCLAKD IVNIVACEGE ERVERYEVAG KWRARMMMAG FTSCSMSQNV TDPIRKLIEE 540 YCDRFKMYEE MGTLHFGWEE KSLIVTSAWR *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MSLVRPSDPS PLSYGSRKLY SLKGTSSAPD LSTQRFGSEK HRTMYMNDTY CSESYEKYFL  60
DFPIEELAIS GISTNSCHPN AWVDSLSPLC NSFTLFDACQ STSDSACLES TSPEELDFED  120
DQVRRKLQEL ERDLLGDPDA ADYDVEMLTN GQNMEIDSEW ANSIQDTLLH DSPKESSSSD  180
SNFSTISSNK DASQLSSQNP RQMLLECAFA ISEENYEEAS AMIKQLRCVV SIQGDPSQRI  240
AAYMVEGLAA RLLESGKCLY KALRCKEPPS SDRLAAMQIL FEVCPCFKFG FMAANCAILE  300
AAKDEKKIHI IDFDVSQGTQ YIKLIQMFAA LPGKPPHLRL TGVDDPESVQ RPIGGLRHIG  360
QRLEQLAKAL RVPFEFRAIA SNASDVTPSM LASKPGEALI VNFAFLLHHM PDESVSTVNQ  420
RDRLLRMVKS LNPKLVTVVE QDMNTNTTPF FSRFVEAYNY YAAVYDSLDA TLPRDSQDRI  480
NVESQCLAKD IVNIVACEGE ERVERYEVAG KWRARMMMAG FTSCSMSQNV TDPIRKLIEE  540
YCDRFKMYEE MGTLHFGWEE KSLIVTSAWR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-65	206	569	25	378	Protein SCARECROW
5b3h_A	2e-65	206	569	24	377	Protein SCARECROW
5b3h_D	2e-65	206	569	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681794	0.0	LN681794.1 Cucumis melo genomic scaffold, anchoredscaffold00061.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461488.1	0.0	PREDICTED: scarecrow-like protein 1
Refseq	XP_008461490.1	0.0	PREDICTED: scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A1S3CF89	0.0	A0A1S3CF89_CUCME; scarecrow-like protein 1
STRING	XP_008461488.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4988	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]