PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

AP2

Protein Properties

Length: 364aa MW: 40642.4 Da PI: 6.6472

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023484P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.9	9.2e-12	57	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ ++ Aa a++ a++k++g MELO3C023484P1 57 SVYRGVTRHRWTGRFEAHLWDkNCWNEgQNKKGRQGAYDDEDAAAHAYDLAALKYWG 113 78*****************99997778888888*99***********98 PP
2	AP2	52.8	9.8e-17	156	207	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a+++a+ +++g MELO3C023484P1 156 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDKAAIEYRG 207 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.2E-8	57	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-14	57	122	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.1E-11	58	121	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-17	58	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.886	58	121	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-6	59	70	IPR001471	AP2/ERF domain
CDD	cd00018	5.08E-15	156	217	No hit	No description
Pfam	PF00847	4.9E-12	156	207	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-17	156	217	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.7E-18	157	216	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-24	157	221	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.083	157	215	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-6	197	217	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MAKISNPSHN NSISTTHNDL HSSSSSSSSS ILHSQRKVLT KRTRKSTPRD SPAQRSSVYR 60 GVTRHRWTGR FEAHLWDKNC WNEGQNKKGR QGAYDDEDAA AHAYDLAALK YWGTETVLNF 120 SLLTYQDELK EMEGQSREEY IGYLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN 180 KYLYLGTYAT QEEAAAAYDK AAIEYRGLNA VTNFDLSRYI KCLRPGEQDI PNNNRPPNPN 240 AGETPSQFDP NSLLGFTFPS QCSSSGQTST EPLPEPGDGD SSSSSTAIEL LLHSSNFKDI 300 IERTSTAETP PETDRPRRCF PDDIQTYFDC TQDSGDFAEG DDGIFGYLSS FLPSSVFHCE 360 LDA*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MAKISNPSHN NSISTTHNDL HSSSSSSSSS ILHSQRKVLT KRTRKSTPRD SPAQRSSVYR  60
GVTRHRWTGR FEAHLWDKNC WNEGQNKKGR QGAYDDEDAA AHAYDLAALK YWGTETVLNF  120
SLLTYQDELK EMEGQSREEY IGYLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN  180
KYLYLGTYAT QEEAAAAYDK AAIEYRGLNA VTNFDLSRYI KCLRPGEQDI PNNNRPPNPN  240
AGETPSQFDP NSLLGFTFPS QCSSSGQTST EPLPEPGDGD SSSSSTAIEL LLHSSNFKDI  300
IERTSTAETP PETDRPRRCF PDDIQTYFDC TQDSGDFAEG DDGIFGYLSS FLPSSVFHCE  360
LDA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681804	0.0	LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461207.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	1e-107	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A1S3CFD7	0.0	A0A1S3CFD7_CUCME; AP2-like ethylene-responsive transcription factor At1g16060
STRING	XP_004163518.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1300	34	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-94	ARIA-interacting double AP2 domain protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]