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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023195P1 | ||||||||
Common Name | ATAF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34179.5 Da PI: 5.6695 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.6 | 8.7e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv +yL++k++++++ + +ike+d+yk++Pw+Lp+ + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + MELO3C023195P1 8 LPPGFRFHPTDEELVLHYLCRKCSSQPIAV-PIIKEIDLYKYDPWHLPELAVCGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGR- 100 79**************************99.88***************7666789*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g+kt+W+mheyrl MELO3C023195P1 101 -PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 132 .778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-61 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.837 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MTVAGLELPP GFRFHPTDEE LVLHYLCRKC SSQPIAVPII KEIDLYKYDP WHLPELAVCG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGR PKTLGIKKAL VFYAGKAPRG 120 VKTNWIMHEY RLANVDRSAA NKTNNLRLDD WVLCRIYNKK GCIEKHYQST DDKAAEFPDF 180 EDEKPNITTN NMVQLPLHNQ LQMETSDSVP RMQTESSSGS DLVTSPELTW DKEVQSQSKW 240 EGEGGGERAA VADFDFFEFN YMDSFSMPED VPFGSQVQFQ MDHLSPLQDM FSYLQRQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-81 | 4 | 165 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF173162 | 0.0 | EF173162.1 Cucumis melo NAC transcription factor (ATAF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001284423.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-117 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B3SGE8 | 0.0 | B3SGE8_CUCME; NAC domain-containing protein 2 | ||||
STRING | XP_008460821.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-119 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 103499583 |