PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023120P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 290aa    MW: 31741.3 Da    PI: 8.5393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023120P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049223245223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+  Fs+ s+L  H  + H
  MELO3C023120P1 223 QCPQCSAKFSSVSSLIDHVEKvH 245
                     7*****************99888 PP
2zf-C2H2157.1e-05262283323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     Cp+C++ F ++  L+ Hi + H
  MELO3C023120P1 262 CPKCSRGFVDPVALVEHIERdH 283
                     ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.15E-11459No hitNo description
Gene3DG3DSA:4.10.1110.101.1E-91053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.8951056IPR000058Zinc finger, AN1-type
SMARTSM001541.5E-41352IPR000058Zinc finger, AN1-type
PfamPF014282.1E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.6E-1091144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.0E-893142No hitNo description
PROSITE profilePS510397.94198147IPR000058Zinc finger, AN1-type
SMARTSM001540.064101142IPR000058Zinc finger, AN1-type
PfamPF014285.3E-8101138IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.85222245IPR007087Zinc finger, C2H2
SMARTSM003550.027222245IPR015880Zinc finger, C2H2-like
PfamPF138943.0E-4223245No hitNo description
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
SMARTSM0035511260283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538260288IPR007087Zinc finger, C2H2
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPNLG KHCNFAVCKQ IDFLPFTCDC CHQVFCLEHR SYNRHSCPKA DRRDVTVVIC  60
PLCAKGVRLI PDQDPNITWE IHVNTECDPS NYDKVTKKKK CPVPGCRELL TFSNTIKCRD  120
CSLDHCLKHR FGPDHKCLGP RKLEPTGFPF VGLLNRSRKE EKGPKKALPT ASSSKWTAFL  180
NAASSVKASA EASMTKLSNE LSQTWISSGS SSNGVGGNGQ VEQCPQCSAK FSSVSSLIDH  240
VEKVHERGGN RTGAKKVVID ACPKCSRGFV DPVALVEHIE RDHGGTSRA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818800.0LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460764.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-126SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1S3CD860.0A0A1S3CD86_CUCME; zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
STRINGXP_008460764.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein