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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C023051P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 30565.5 Da PI: 10.1492 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.8e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+ +G g+W+++a+ g++R +k+c++rw +yl MELO3C023051P1 17 KGPWTAEEDRLLMEYVRVHGEGRWNSVAHLAGLRRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ MELO3C023051P1 70 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.557 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-17 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.56E-11 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 19.35 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.91E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGEHFGWGKV AAEGWRKGPW TAEEDRLLME YVRVHGEGRW NSVAHLAGLR RNGKSCRLRW 60 VNYLRPDLKR GQITPHEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK 120 VTSSRNEKPN ARFLRKHQYH QQQQQQQQYW ELLRQQQHRE LLRQQQQLNR QPAMKAEPIN 180 NSQPQIRQES CTCIISSFNP QIDHDQPGSL LLSLPEAISM EDHQLWDGLL WNFEDFHTNL 240 TPNSAFGKAN VHNLVAPFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 7 | 119 | 17 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681844 | 0.0 | LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460699.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A1S3CE84 | 0.0 | A0A1S3CE84_CUCME; myb-related protein 305-like | ||||
STRING | XP_008460699.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 5e-75 | myb domain protein 79 |