PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022963P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 75aa    MW: 8590.14 Da    PI: 11.1669
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022963P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-272069251
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                    prlrWtpeLH+ Fv+ ve LGG ++AtPk+il++m+vkgL ++h+kSHLQ
  MELO3C022963P1 20 PRLRWTPELHRYFVQTVEILGGRNQATPKKILQMMGVKGLKISHIKSHLQ 69
                    8************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5071674IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-241769IPR009057Homeodomain-like
SuperFamilySSF466891.79E-142072IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-222072IPR006447Myb domain, plants
PfamPF002493.7E-82171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MKSCSSDRIG VRQYNKSELP RLRWTPELHR YFVQTVEILG GRNQATPKKI LQMMGVKGLK  60
ISHIKSHLQV LFPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-162169351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-162169351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-162169351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-162169351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818655e-66LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599.
GenBankLN7132615e-66LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466796.11e-44PREDICTED: putative Myb family transcription factor At1g14600
SwissprotQ700D92e-22MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A1S3CS112e-43A0A1S3CS11_CUCME; putative Myb family transcription factor At1g14600
STRINGXP_008466796.14e-44(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-26G2-like family protein