PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022854P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 604aa    MW: 65926.2 Da    PI: 5.0987
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022854P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.34.1e-1362305961374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++++la+al++++  la++++ +m+++a+yf++ALa+r++r    +y+      +s    s+ l++   f+e++P+lkf+h
  MELO3C022854P1 230 LVHALMACAEAVQQENMKLADALVKHIGFLATSQAGAMRKVATYFAQALARRIYR----IYSPQDGLYSS---YSDPLQM--HFYETCPYLKFAH 315
                     689****************************************************....77544333333...5566555..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIlea++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++  + +l+++g++La++Ae++gv+fefn +v+++l+dl
  MELO3C022854P1 316 FTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPEnAAGSLQQVGWKLAQMAEAIGVDFEFNHIVCSNLADL 410
                     ********************************************************998999********************************* PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     +  +L+++p   Ea+aVn+v+ lhrll++++++e+    vL  +k+++Pk+v++veqea+hn++ Fl+rf+eal+yys lfdsle + +  +  +
  MELO3C022854P1 411 DSAALEIRPaaVEAVAVNSVFDLHRLLARPGAIEK----VLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSSGFEpgS 501
                     *********999***********************....*********************************************88755544679 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e++ +++++lg++i+nvvaceg++r+erhe+l +Wr r+e+aGF pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  MELO3C022854P1 502 EDVLLSEVYLGKQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLGWHTRPLIATSAWQ 596
                     **********************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011293.4E-3655128No hitNo description
PfamPF120414.2E-3755122IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.367204575IPR005202Transcription factor GRAS
PfamPF035141.4E-133230596IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MKRELEDDRS TTPGDSRRIV KGDCSSMSSG KLKMWHLQEE EAGEDAKDGA AGGMDELLAV  60
LGYKVRSSDM ADVALKLEQL EMVMGTAHEH GISHLASDTV HYNPSDLSSW VQNMLSEFNN  120
STNHFNPPPQ SSPYSNCHHP IQSTKSCFYD DDSEYDLSAI PGVAVLPPKD ETQTNSRKRL  180
KIETQSSSVN LLPSPSSSSP PFASTPGIAS ESSRPVMVVE EESQETGIQL VHALMACAEA  240
VQQENMKLAD ALVKHIGFLA TSQAGAMRKV ATYFAQALAR RIYRIYSPQD GLYSSYSDPL  300
QMHFYETCPY LKFAHFTANQ AILEAFATAA RVHVIDFSLN QGMQWPALMQ ALALRPGGPP  360
AFRLTGIGPP QPENAAGSLQ QVGWKLAQMA EAIGVDFEFN HIVCSNLADL DSAALEIRPA  420
AVEAVAVNSV FDLHRLLARP GAIEKVLGSI KTTKPKIVTI VEQEANHNGP VFLDRFTEAL  480
HYYSNLFDSL EGSSSGFEPG SEDVLLSEVY LGKQICNVVA CEGTNRVERH ESLTQWRTRM  540
ESAGFDPVHL GSNAFKQASM LLALFAGGEG YRVEENNGCL MLGWHTRPLI ATSAWQLAPD  600
ESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-682145953378Protein SCARECROW
5b3h_A2e-682185956377Protein SCARECROW
5b3h_D2e-682185956377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818930.0LN681893.1 Cucumis melo genomic scaffold, anchoredscaffold00055.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460522.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A1S3CDW70.0A0A1S3CDW7_CUCME; DELLA protein GAI-like
STRINGXP_008460522.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein