PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022846P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 30054.4 Da PI: 6.942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.1e-10 | 179 | 222 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq MELO3C022846P1 179 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 222 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 169 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-13 | 172 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.294 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.34E-12 | 174 | 226 | No hit | No description |
SMART | SM00353 | 1.0E-11 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-7 | 180 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MEKNGGGYLK SLAIGKGHDQ NPNGDFVFRD ATNYQLGLQQ QQSLINFGHK MNNESLLSFE 60 AQGICQLDLT YNWDDQERVM EDPNCFQTAT SHNNYSPSKD HHHNKNGNSG SVYEWLYCES 120 TTDFSDSIQD AEGTQEIVPN HKRSHSTGES SGSVCKKQCT AAPKKQKPKS ATAKDPQSIA 180 AKNRRERISE RLKILQELVP NGSKVDLVTM LEKAISYVKF LQLQVKILAT DEFWPVQGGK 240 APDISQVKEA IDVILSSQRE RSSSSNTEK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681893 | 0.0 | LN681893.1 Cucumis melo genomic scaffold, anchoredscaffold00055. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460515.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 2e-57 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A1S3CCR8 | 0.0 | A0A1S3CCR8_CUCME; putative transcription factor bHLH086 | ||||
STRING | XP_008460515.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 1e-57 | RHD SIX-LIKE 1 |
Publications ? help Back to Top | |||
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