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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022568P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 619aa MW: 65845.4 Da PI: 9.255 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H MELO3C022568P1 78 FICEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ MELO3C022568P1 154 WKCDKCSKRYAVQSDWKAHSKTC 176 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-6 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.46E-7 | 77 | 100 | No hit | No description |
Pfam | PF12171 | 3.1E-5 | 78 | 100 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 119 | 149 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 142 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.46E-7 | 149 | 174 | No hit | No description |
SMART | SM00355 | 140 | 154 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MAASSSSVPL FGVREEGQMR GQQPPQPQPP PPSAPSNSST ALPTPPPQKK KRNQPGTPNP 60 DAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS TKEPKRKVYL 120 CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAQESA RHPPNLGTAI GSHLYGGNSN VGLTLSQVPQ 240 LSSLQDHSNI TQSPHDVLRL GGGRTGQFTH LLPPSIGSSF RPPPQQAMPS SNAAFFGLSD 300 QTNQNSFHED HHQSQSQQGL FGNKPFHGLM QFPSDIQTHA NNNSNSASNL FNLSFISNPT 360 GDNTSNMNNN NDTNTNNSNS SSNNNNNLPS SLLNQFNGTN NGNNDGPASN IFAVNIMGDQ 420 INSAAVPSLY SNTAPGGCSS GTSGGGAIPH MSATALLQKA AQLGSTTSSS NTTATLLRTF 480 GSSSTSSGKA SDRTLFPPSY GGVVFSENES NLQDLMNSFA NASSGSGMFG SFGVESLEDP 540 TKLQQNLSTV SMGGGTDRLT RDFLGVGQIV RSMSGGGGGG GYSQREHKQG GQGIVMEGNE 600 SNTAPSSNAF GGGNGNYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 150 | 211 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 150 | 211 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681904 | 0.0 | LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460216.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-145 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A1S3CCG7 | 0.0 | A0A1S3CCG7_CUCME; protein indeterminate-domain 5, chloroplastic | ||||
STRING | XP_008460216.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-117 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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