PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022281P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 203aa    MW: 22535.8 Da    PI: 7.0795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022281P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-194091156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++++GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  MELO3C022281P1 40 PKFRGVRLRT-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 91
                    79*****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-304098No hitNo description
PfamPF008471.6E-134091IPR001471AP2/ERF domain
SMARTSM003801.1E-3541104IPR001471AP2/ERF domain
PROSITE profilePS5103222.9194198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-314199IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-214199IPR016177DNA-binding domain
PRINTSPR003679.1E-104253IPR001471AP2/ERF domain
PRINTSPR003679.1E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTTNSHHSTT SSSATTSRKR QRSSTSSATE SESDQEISTP KFRGVRLRTW GKWVSEIREP  60
RKKSRIWLGT YPTAEMAARA HDVAALAIKG HRAFLNFPQL KHQLPRPASL SAKDIQAAAA  120
QAAALKHEPE TATSCRGEEE ESTWFDLPDL IVSNGFLLGL DENYSSSCSS SSSSTSWQFL  180
VDDHEDNHFQ WHSDFSHTIF PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1641981472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460188.11e-147PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9M0802e-42ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A1S3CBH61e-146A0A1S3CBH6_CUCME; ethylene-responsive transcription factor ERF039-like
STRINGXP_008460188.11e-147(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2454933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]