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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022281P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22535.8 Da PI: 7.0795 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 40 | 91 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ MELO3C022281P1 40 PKFRGVRLRT-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 91 79*****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.44E-30 | 40 | 98 | No hit | No description |
Pfam | PF00847 | 1.6E-13 | 40 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 41 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.919 | 41 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 41 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 41 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.1E-10 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTTNSHHSTT SSSATTSRKR QRSSTSSATE SESDQEISTP KFRGVRLRTW GKWVSEIREP 60 RKKSRIWLGT YPTAEMAARA HDVAALAIKG HRAFLNFPQL KHQLPRPASL SAKDIQAAAA 120 QAAALKHEPE TATSCRGEEE ESTWFDLPDL IVSNGFLLGL DENYSSSCSS SSSSTSWQFL 180 VDDHEDNHFQ WHSDFSHTIF PV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 41 | 98 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460188.1 | 1e-147 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9M080 | 2e-42 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A1S3CBH6 | 1e-146 | A0A1S3CBH6_CUCME; ethylene-responsive transcription factor ERF039-like | ||||
STRING | XP_008460188.1 | 1e-147 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24549 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 3e-40 | ERF family protein |
Publications ? help Back to Top | |||
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