PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022222P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25073.2 Da PI: 5.3795 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.8e-13 | 178 | 223 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+e++P+ +k + a++Le+AveY+k Lq MELO3C022222P1 178 SIAERVRRTRISDRIRKLQEVVPNM----DKQTNTADMLEEAVEYVKFLQ 223 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.634 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-15 | 175 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.38E-13 | 176 | 227 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.1E-15 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-10 | 178 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 178 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQSTTGAAAT ATASSRTSGG GPGLARFRSA PAAWLEALLE DDEEDPLKPN PCLTQLLAAN 60 SSDLVSAPGD HPLFDPNPSP AFHRQNSSPP EFLAPSGIAE GFYTSYPLNS SPTLDISPTS 120 KPATDVDAQN FFPKFSPQLK REGSGVSSLI DMEMEKLLED SVPCRVRAKR GCATHPRSIA 180 ERVRRTRISD RIRKLQEVVP NMDKQTNTAD MLEEAVEYVK FLQKQIQVFN * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 0.0 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459678.1 | 1e-167 | PREDICTED: transcription factor bHLH80 isoform X1 | ||||
Swissprot | Q9C8P8 | 1e-72 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A1S3CBY9 | 1e-166 | A0A1S3CBY9_CUCME; transcription factor bHLH80 isoform X1 | ||||
STRING | XP_008459678.1 | 1e-166 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 4e-55 | bHLH family protein |