PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022181P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20489.9 Da PI: 5.0361 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 9 | 59 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f t+e+Aa a++ a+ ++g MELO3C022181P1 9 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDVAAYHFRG 59 67*****999.**********8...557**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.99E-23 | 9 | 68 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.2E-12 | 9 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.23E-33 | 9 | 69 | No hit | No description |
PROSITE profile | PS51032 | 24.026 | 10 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-39 | 10 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 10 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 11 | 22 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRSHGAATSS YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ETPEMAATAY DVAAYHFRGR 60 DARLNFPHLV NSLPFPLSST PDDIRLAAHE AALRVRTTPA VASSELGDET STLGLAPVTV 120 RLSPSQIQAI NESTLDSPNM WMQMSSESML MDQEFSNGNV FVDDMQDDEM WENMHNDSLW 180 DP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 6 | 72 | 1 | 68 | ATERF1 |
3gcc_A | 1e-18 | 6 | 72 | 1 | 68 | ATERF1 |
5wx9_A | 2e-18 | 2 | 71 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 0.0 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459604.1 | 1e-133 | PREDICTED: ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 2e-64 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A1S3CB31 | 1e-132 | A0A1S3CB31_CUCME; ethylene-responsive transcription factor ERF021 | ||||
STRING | XP_008459604.1 | 1e-133 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 6e-67 | ERF family protein |