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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
MELO3C022122P1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
Whirly |
| Protein Properties |
Length: 247aa MW: 27300.3 Da PI: 10.1098 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MELO3C022122P1 | genome | MELONOMICS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 180.9 | 2.4e-56 | 70 | 205 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96
vyk+kaa+++++ +ptf++++sgnl+++r+G+++l++a+a++erkydW +kq falsatev++l+++++k+sceffhdp++ +s +G+vrk l +
MELO3C022122P1 70 VYKGKAAVSIEPCMPTFTKVESGNLIIDRRGSIMLTFAPAMGERKYDWTRKQLFALSATEVGSLISMGPKDSCEFFHDPGMLSSTAGQVRKNLAI 164
9********************************************************************************************** PP
Whirly 97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
+ ++dG G++++l+v n+ +++n+ +s+P + +ef+vl+++
MELO3C022122P1 165 KAHTDGNGYMISLNVVNKPQNTNDFLSLPFTTGEFSVLKTA 205
**************************************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MSTSRMMKLT RLFSRNQLFE QIVCKKDGYV GHPLGSHPFS TRAGIPNITQ NFTHTVTKNA 60
GGRAFVSYHV YKGKAAVSIE PCMPTFTKVE SGNLIIDRRG SIMLTFAPAM GERKYDWTRK 120
QLFALSATEV GSLISMGPKD SCEFFHDPGM LSSTAGQVRK NLAIKAHTDG NGYMISLNVV 180
NKPQNTNDFL SLPFTTGEFS VLKTACSFAL PSLLGWDRVF NPNIGMGNGF QSKRIDREAL 240
SLEWER*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 3e-74 | 62 | 219 | 9 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 3e-74 | 62 | 219 | 9 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 3e-74 | 62 | 219 | 9 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 3e-74 | 62 | 219 | 9 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
