PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021214P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family BES1
Protein Properties Length: 699aa    MW: 78208 Da    PI: 6.0528
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021214P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.92.9e-44732111132
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasas 89 
                     gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL++eAGwvv +DGtt++   +g kp    ++a +  ss+ as
  MELO3C021214P1  73 GGGRRCRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALATEAGWVVLPDGTTFPsrsQGIKPAgggSTAVTSSSSHMAS 167
                     68999****************************************************************98889999998655555666666688 PP

          DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislas 132
                     ++++++  + +s+ ++s  e  ++++k +  p +  +d  ++a 
  MELO3C021214P1 168 QQTPSTsIRGVSCGFRSVPEYNACRMKGVFLPNSPPYDASPNAR 211
                     88887768899*********************999999887664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.3E-3974198IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.86E-178256694IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.8E-194259694IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.8E-102264684IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68295309IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68316334IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68338359IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060342350IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008423.2E-6421430IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.7E-68431453IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68504523IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68538554IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68555566IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-68573596IPR001554Glycoside hydrolase, family 14
PRINTSPR008423.2E-6576586IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.7E-68613635IPR001554Glycoside hydrolase, family 14
PRINTSPR008423.2E-6664678IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008423.2E-6679693IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MATDMQKLIG TSEEDDDEDV EMDVKEEDDE EDDGARRIRS SLMVGDDGGM VTSGSNNNRF  60
EQHQVQEQVG TPGGGRRCRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN  120
DVIAALATEA GWVVLPDGTT FPSRSQGIKP AGGGSTAVTS SSSHMASQQT PSTSIRGVSC  180
GFRSVPEYNA CRMKGVFLPN SPPYDASPNA RCQSSSLMGD AGEQSAGHPL INSSVDAVDG  240
MQIVDATPKL PERDFAGSAY IPVYVMLPLG VINMKCELVD PDGLLKQLRL LKSANVDGVM  300
VDCWWGIVEA HSPHEYNWNG YRKLFQMVHE LKLKLQVVLS FHECGGNVGD DVCIPLPHWV  360
AEIGRSNPDI FFTDREGRRN PECLSWGVDK ERVLRGRTGL EVYFDYMRSF RVEFNDFFED  420
GVITTIGVGL GPCGELRFPS FPVKHGWRYP GIGEFQCYDQ YLLKNLRKAA EARGHSFWAR  480
GPDNAGSYSS RPHETGFFCD GGDYDGYYGR FFLNWYSKVL VDHGDRVLYL AKLAFEGTRI  540
VAKLSGIHWW YKTASHAAEL TAGFYNPCNR DGYAAIMAML KKHSASLNFT PAEFHMLHQR  600
EDFSNSLSDP EAVVWQVTNA AWDVGVEVVS ENPLPFLDRV GYNKILDNAK PLADPDGRYL  660
SSFIYHRLSP LLLERQNFME FERFVKRMHG EAVHDLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-15026069111444BETA-AMYLASE
1byb_A1e-15026069111444BETA-AMYLASE
1byc_A1e-15026069111444BETA-AMYLASE
1byd_A1e-15026069111444BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458240.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_008458241.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_008458242.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_008458243.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_016902303.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1S4E2520.0A0A1S4E252_CUCME; Beta-amylase
STRINGXP_008458240.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]