PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C021212P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 658aa MW: 74354.5 Da PI: 5.8134 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.3 | 2.1e-06 | 471 | 504 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N++f L+++lP++ +K++iL +++Y+k+L+ MELO3C021212P1 471 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 504 99***********8.....58***************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-51 | 8 | 201 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 8.829 | 454 | 503 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-5 | 463 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.07E-6 | 469 | 508 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-9 | 471 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-9 | 471 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MACEPGFLRK QLAVAVKSIQ WSYAIFWSPS TRQHGSIHQM GVENPIWVLE WCDGYYNGDI 60 KTRKTVQAED VHVDNMGLHR SEQLRELYRS LLEGESEQRT KKPPASLSPE DLSDAEWYYL 120 VCMSFFFNQG QGLPGRALAD DRTIWLCNAQ YAESSVFSRS LLAKSASIQT VVCFPYLGGV 180 IELGVTEQVA EDPCLLQHVK DFLLKFSKPI CSKKPSSAAY KDDNGKEPMT AKSDNEIVEF 240 LAMENLYCST AVKFDGKSVN GIQRKKINEF GIDSLDDFSN GCEQYHQMED SLRLEGVEGG 300 ASRFQSLQFL DDDFSYGFQD SMNPSDCISE ALANQDKVSS SPRLKDANNL PLKELQNPNQ 360 TQSGSLDPSS DEDMHYKRTI FTILGSSTQL VGSPLLHNFS NRSNFTPWKK VMAETHTPPM 420 QQRMLKKILF AVPLLSAGSL KGLKDVERSI LKQGNNNSCT KNATLDKLRE NEKFMALKSM 480 LPSLNEINKV SILNDTIKYL KMLEARVQEL ETCMDSLYYE ERFRRKYLDM VEQTSDNYDY 540 EKIEGSLKPS TNKRKACEMD ETDLKLKHDF PKVGHKLDVK VSMEEHEVLI DMHCPYREYI 600 LVDVVDALND LQLDAYSVQS SDHNGFFSLT LKSKFRGIAA ASVGMIKLAL LKVANKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-15 | 8 | 199 | 48 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-15 | 8 | 199 | 48 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-15 | 8 | 199 | 48 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN190488 | 0.0 | JN190488.1 Cucumis sativus GL3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458230.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor EGL1-like | ||||
TrEMBL | A0A1S3C7Z7 | 0.0 | A0A1S3C7Z7_CUCME; LOW QUALITY PROTEIN: transcription factor EGL1-like | ||||
STRING | XP_008458230.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-145 | bHLH family protein |